The ZymoBIOMICS™ HMW DNA Standard provides a solution for routine quality control and benchmarking the performance of long read/3rd generation sequencing for microbiomics and metagenomics analysis. Consisting of a mixture of high molecular weight genomic DNA from seven bacterial and one fungal strain, this standard has an accurately defined composition, negligible impurities (<0.01%) and contains genomes of a wide range of GC content (15%-85%).
Unlike other microbial standards which contain fragmented DNA due to mechanical homogenisation-based DNA extraction, the ZymoBIOMICS HMW standard offers intact, >50 kb DNA.
Benefits of using ZymoBIOMICS HMW DNA Standard
• Assess performance & serve as a routine quality control for 3rd generation sequencing (e.g. Oxford Nanopore® & PacBio®)
• >50 kb size
• Long-read sequencing ready
• 100 ng/µl concentration
• Certified <0.01% foreign microbial DNA
• Certified <15% average relative-abundance deviation
Species
|
Gram stain
|
Theoretical composition (%)
|
---|---|---|
Pseudomonas aeruginosa
|
-
|
14.0
|
Escherichia coli
|
-
|
14.0
|
Salmonella enterica
|
-
|
14.0
|
Enterococcus faecalis
|
+
|
14.0
|
Staphylococcus faecalis
|
+
|
14.0
|
Listeria monocytogenes
|
+
|
14.0
|
Bacillus subtilis
|
+
|
14.0
|
Saccharomyces cerevisiae
|
Yeast
|
2.0
|
High-quality long read sequencing
Long read sequencing was performed on Oxford Nanopore MinION™ using the Ligation Sequencing kit (LSK 109) for library preparation. Basecalling quality of number of reads shows overall good q-score of 11.
Material available for download
ZymoBIOMICS HMW DNA Standard protocol
Also available is the Quick-DNA™ HMW MagBead kit for purification of DNA up to 150 kb optimised for long read sequencing.
PacBio® is a trademark of Pacific Biosciences®.
Oxford Nanopore® and MinION™ are trademarks of Oxford Nanopore Technologies.
Products
Note: product availability depends on country - see product detail page.
Details | Cat number & supplier | Size | Price |
ZymoBIOMICS HMW DNA Standard D6322 · Zymo Research | D6322 Zymo Research |
5000 ng |
£457.00
5000 ng
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