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siPOOL citations

Adriaens, C., Standaert, L., Barra, J., Latil, M., Verfaillie, A., Kalev, P., Boeckx, B., Wijnhoven, P.W.G., Radaelli, E., Vermi, W., Leucci, E., Lapouge, G., Beck, B., van den Oord, J., Nakagawa, S., Hirose, T., Sablina, A.A., Lambrechts, D., Aerts, S., Blanpain, C. and Marine, J.-C. (2016). p53 induces formation of NEAT1 lncRNA-containing paraspeckles that modulate replication stress response and chemosensitivity. Nature Medicine, 22(8), pp.861–868.

Armento, A., Ilina, E.I., Kaoma, T., Muller, A., Vallar, L., Niclou, S.P., Krüger, M.A., Mittelbronn, M. and Naumann, U. (2017). Carboxypeptidase E transmits its anti-migratory function in glioma cells via transcriptional regulation of cell architecture and motility regulating factors. International Journal of Oncology, [online] 51(2), pp.702–714. Available at: https://www.ncbi.nlm.nih.gov/pubmed/28656234 [Accessed 18 Mar. 2020].

Blirando, K., Blaise, R., Gorodnaya, N., Rouxel, C., Meilhac, O., Vincent, P. and Limon, I. (2015). The stellate vascular smooth muscle cell phenotype is induced by IL-1β via the secretion of PGE2 and subsequent cAMP-dependent protein kinase A activation. Biochimica Et Biophysica Acta, [online] 1853(12), pp.3235–3247. Available at: https://www.ncbi.nlm.nih.gov/pubmed/26403276 [Accessed 18 Mar. 2020].

Coll-Bonfill, N., Peinado, V.I., Pisano, M.V., Párrizas, M., Blanco, I., Evers, M., Engelmann, J.C., García-Lucio, J., Tura-Ceide, O., Meister, G., Barberà, J.A. and Musri, M.M. (2016). Slug Is Increased in Vascular Remodeling and Induces a Smooth Muscle Cell Proliferative Phenotype. PloS One, [online] 11(7), p.e0159460. Available at: https://www.ncbi.nlm.nih.gov/pubmed/27441378 [Accessed 18 Mar. 2020].

Coscia, F., Lengyel, E., Duraiswamy, J., Ashcroft, B., Bassani-Sternberg, M., Wierer, M., Johnson, A., Wroblewski, K., Montag, A., Yamada, S.D., López-Méndez, B., Nilsson, J., Mund, A., Mann, M. and Curtis, M. (2018). Multi-level Proteomics Identifies CT45 as a Chemosensitivity Mediator and Immunotherapy Target in Ovarian Cancer. Cell, [online] 175(1), pp.159–170.e16. Available at: https://www.ncbi.nlm.nih.gov/pubmed/30241606 [Accessed 18 Mar. 2020].

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Dietrich, P., Kuphal, S., Spruss, T., Hellerbrand, C. and Bosserhoff, A.K. (2018b). Wild-type KRAS is a novel therapeutic target for melanoma contributing to primary and acquired resistance to BRAF inhibition. Oncogene, [online] 37(7), pp.897–911. Available at: https://www.ncbi.nlm.nih.gov/pubmed/29059159 [Accessed 18 Mar. 2020].

Goyal, A., Fiškin, E., Gutschner, T., Polycarpou-Schwarz, M., Groß, M., Neugebauer, J., Gandhi, M., Caudron-Herger, M., Benes, V. and Diederichs, S. (2017a). A cautionary tale of sense-antisense gene pairs: independent regulation despite inverse correlation of expression. Nucleic Acids Research, [online] 45(21), pp.12496–12508. Available at: https://www.ncbi.nlm.nih.gov/pubmed/29059299 [Accessed 18 Mar. 2020].

Goyal, A., Myacheva, K., Groß, M., Klingenberg, M., Duran Arqué, B. and Diederichs, S. (2017b). Challenges of CRISPR/Cas9 applications for long non-coding RNA genes. Nucleic Acids Research, [online] 45(3), p.e12. Available at: https://www.ncbi.nlm.nih.gov/pubmed/28180319 [Accessed 18 Mar. 2020].

Hannus, M., Beitzinger, M., Engelmann, J.C., Weickert, M.-T., Spang, R., Hannus, S. and Meister, G. (2014). siPools: highly complex but accurately defined siRNA pools eliminate off-target effects. Nucleic Acids Research, [online] 42(12), pp.8049–8061. Available at: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4081087/ [Accessed 18 Mar. 2020].

Hauptmann, J., Schraivogel, D., Bruckmann, A., Manickavel, S., Jakob, L., Eichner, N., Pfaff, J., Urban, M., Sprunck, S., Hafner, M., Tuschl, T., Deutzmann, R. and Meister, G. (2015). Biochemical isolation of Argonaute protein complexes by Ago-APP. Proceedings of the National Academy of Sciences of the United States of America, [online] 112(38), pp.11841–11845. Available at: https://www.ncbi.nlm.nih.gov/pubmed/26351695 [Accessed 18 Mar. 2020].

Ilina, E.I., Armento, A., Sanchez, L.G., Reichlmeir, M., Braun, Y., Penski, C., Capper, D., Sahm, F., Jennewein, L., Harter, P.N., Zukunft, S., Fleming, I., Schulte, D., Le Guerroué, F., Behrends, C., Ronellenfitsch, M.W., Naumann, U. and Mittelbronn, M. (2017). Effects of soluble CPE on glioma cell migration are associated with mTOR activation and enhanced glucose flux. Oncotarget, [online] 8(40), pp.67567–67591. Available at: https://www.ncbi.nlm.nih.gov/pubmed/28978054 [Accessed 18 Mar. 2020].

Jiang, P., Lee, W., Li, X., Johnson, C., Liu, J.S., Brown, M., Aster, J.C. and Liu, X.S. (2018). Genome-Scale Signatures of Gene Interaction from Compound Screens Predict Clinical Efficacy of Targeted Cancer Therapies. Cell Systems, [online] 6(3), pp.343–354.e5. Available at: https://www.ncbi.nlm.nih.gov/pubmed/29428415 [Accessed 18 Mar. 2020].

Kaller, M., Götz, U. and Hermeking, H. (2017). Loss of p53-inducible long non-coding RNA LINC01021 increases chemosensitivity. Oncotarget, 8(61).

Kästle, M., Kistler, B., Lamla, T., Bretschneider, T., Lamb, D., Nicklin, P. and Wyatt, D. (2018). FKBP51 modulates steroid sensitivity and NFκB signalling: A novel anti-inflammatory drug target. European Journal of Immunology, [online] 48(11), pp.1904–1914. Available at: https://www.ncbi.nlm.nih.gov/pubmed/30169894 [Accessed 18 Mar. 2020].

Klingenberg, M., Groß, M., Goyal, A., Polycarpou-Schwarz, M., Miersch, T., Ernst, A.-S., Leupold, J., Patil, N., Warnken, U., Allgayer, H., Longerich, T., Schirmacher, P., Boutros, M. and Diederichs, S. (2018). The Long Noncoding RNA Cancer Susceptibility 9 and RNA Binding Protein Heterogeneous Nuclear Ribonucleoprotein L Form a Complex and Coregulate Genes Linked to AKT Signaling. Hepatology (Baltimore, Md.), [online] 68(5), pp.1817–1832. Available at: https://www.ncbi.nlm.nih.gov/pubmed/29790588 [Accessed 18 Mar. 2020].

Kordaß, T., Weber, C.E.M., Oswald, M., Ast, V., Bernhardt, M., Novak, D., Utikal, J., Eichmüller, S.B. and König, R. (2016). SOX5 is involved in balanced MITF regulation in human melanoma cells. BMC medical genomics, [online] 9, p.10. Available at: https://www.ncbi.nlm.nih.gov/pubmed/26927636 [Accessed 18 Mar. 2020].

Noethel, B., Ramms, L., Dreissen, G., Hoffmann, M., Springer, R., Rübsam, M., Ziegler, W.H., Niessen, C.M., Merkel, R. and Hoffmann, B. (2018). Transition of responsive mechanosensitive elements from focal adhesions to adherens junctions on epithelial differentiation. Molecular Biology of the Cell, [online] 29(19), pp.2317–2325. Available at: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6249805/ [Accessed 18 Mar. 2020].

Nötzold, L., Frank, L., Gandhi, M., Polycarpou-Schwarz, M., Groß, M., Gunkel, M., Beil, N., Erfle, H., Harder, N., Rohr, K., Trendel, J., Krijgsveld, J., Longerich, T., Schirmacher, P., Boutros, M., Erhardt, S. and Diederichs, S. (2017). The long non-coding RNA LINC00152 is essential for cell cycle progression through mitosis in HeLa cells. Scientific Reports, [online] 7(1), p.2265. Available at: https://www.ncbi.nlm.nih.gov/pubmed/28536419 [Accessed 18 Mar. 2020].

Ott, C.A., Linck, L., Kremmer, E., Meister, G. and Bosserhoff, A.K. (2016). Induction of exportin-5 expression during melanoma development supports the cellular behavior of human malignant melanoma cells. Oncotarget, [online] 7(38), pp.62292–62304. Available at: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5308727/ [Accessed 18 Mar. 2020].

Polycarpou-Schwarz, M., Groß, M., Mestdagh, P., Schott, J., Grund, S.E., Hildenbrand, C., Rom, J., Aulmann, S., Sinn, H.-P., Vandesompele, J. and Diederichs, S. (2018). The cancer-associated microprotein CASIMO1 controls cell proliferation and interacts with squalene epoxidase modulating lipid droplet formation. Oncogene, [online] 37(34), pp.4750–4768. Available at: https://www.ncbi.nlm.nih.gov/pubmed/29765154 [Accessed 18 Mar. 2020].

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Prestigiacomo, V. and Suter-Dick, L. (2018). Nrf2 protects stellate cells from Smad-dependent cell activation. PloS One, [online] 13(7), p.e0201044. Available at: https://www.ncbi.nlm.nih.gov/pubmed/30028880 [Accessed 18 Mar. 2020].

Rietscher, K., Keil, R., Jordan, A. and Hatzfeld, M. (2018). 14-3-3 proteins regulate desmosomal adhesion via plakophilins. Journal of Cell Science, [online] 131(10). Available at: https://jcs.biologists.org/content/131/10/jcs212191 [Accessed 18 Mar. 2020].

Ruivo, M.T.G., Vera, I.M., Sales-Dias, J., Meireles, P., Gural, N., Bhatia, S.N., Mota, M.M. and Mancio-Silva, L. (2016). Host AMPK Is a Modulator of Plasmodium Liver Infection. Cell Reports, [online] 16(10), pp.2539–2545. Available at: https://www.ncbi.nlm.nih.gov/pubmed/27568570 [Accessed 18 Mar. 2020].

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