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Direct-zol RNA citations

Abudayyeh, O.O., Gootenberg, J.S., Essletzbichler, P., Han, S., Joung, J., Belanto, J.J., Verdine, V., Cox, D.B.T., Kellner, M.J., Regev, A., Lander, E.S., Voytas, D.F., Ting, A.Y. and Zhang, F. (2017). RNA targeting with CRISPR–Cas13. Nature, [online] 550(7675), pp.280–284. Available at: https://www.nature.com/articles/nature24049 [Accessed 26 Mar. 2019].

Broekema, N.M. and Imperiale, M.J. (2013). miRNA regulation of BK polyomavirus replication during early infection. Proceedings of the National Academy of Sciences, 110(20), pp.8200–8205.

Burst, V., Pütsch, F., Kubacki, T., Völker, L.A., Bartram, M.P., Müller, R.-U., Gillis, M., Kurschat, C.E., Grundmann, F., Müller-Ehmsen, J., Benzing, T. and Teschner, S. (2013). Survival and distribution of injected haematopoietic stem cells in acute kidney injury. Nephrology, Dialysis, Transplantation: Official Publication of the European Dialysis and Transplant Association - European Renal Association, [online] 28(5), pp.1131–1139. Available at: https://www.ncbi.nlm.nih.gov/pubmed/23197679 [Accessed 25 Mar. 2020].

Chen, X.D., Gill, T.A., Nguyen, C.D., Killiny, N., Pelz-Stelinski, K.S. and Stelinski, L.L. (2019). Insecticide toxicity associated with detoxification enzymes and genes related to transcription of cuticular melanization among color morphs of Asian citrus psyllid. Insect Science, [online] 26(5), pp.843–852. Available at: https://www.ncbi.nlm.nih.gov/pubmed/29485745 [Accessed 25 Mar. 2020].

Dong, T.G. and Mekalanos, J.J. (2012). Characterization of the RpoN regulon reveals differential regulation of T6SS and new flagellar operons in Vibrio cholerae O37 strain V52. Nucleic Acids Research, 40(16), pp.7766–7775.

Dunn, A.K. (2018). Alternative Oxidase Activity Reduces Stress in Vibrio fischeri Cells Exposed to Nitric Oxide. Journal of Bacteriology, [online] 200(15). Available at: https://www.ncbi.nlm.nih.gov/pubmed/29760206 [Accessed 25 Mar. 2020].

Errichelli, L., Dini Modigliani, S., Laneve, P., Colantoni, A., Legnini, I., Capauto, D., Rosa, A., De Santis, R., Scarfò, R., Peruzzi, G., Lu, L., Caffarelli, E., Shneider, N.A., Morlando, M. and Bozzoni, I. (2017). FUS affects circular RNA expression in murine embryonic stem cell-derived motor neurons. Nature Communications, [online] 8(1), pp.1–11. Available at: https://www.nature.com/articles/ncomms14741 [Accessed 25 Mar. 2020].

Fadl, A.E.A., Mahfouz, M.E., El-Gamal, M.M.T. and Heyland, A. (2017). New biomarkers of post-settlement growth in the sea urchin Strongylocentrotus purpuratus. Heliyon, [online] 3(10), p.e00412. Available at: https://www.ncbi.nlm.nih.gov/pubmed/29034337 [Accessed 25 Mar. 2020].

Flanagan, M., Li, C., Dietrich, M.A., Richard, M. and Yao, S. (2018). Downregulation of heat shock protein B8 decreases osteogenic differentiation potential of dental pulp stem cells during in vitro proliferation. Cell Proliferation, [online] 51(2), p.e12420. Available at: https://www.ncbi.nlm.nih.gov/pubmed/29266518 [Accessed 25 Mar. 2020].

Fuessel, S., Lohse-Fischer, A., Vu Van, D., Salomo, K., Erdmann, K. and Wirth, M.P. (2018). Quantification of MicroRNAs in Urine-Derived Specimens. Methods in Molecular Biology (Clifton, N.J.), [online] 1655, pp.201–226. Available at: https://www.ncbi.nlm.nih.gov/pubmed/28889388 [Accessed 25 Mar. 2020].

Fujii, Y., Shimoike, T., Takagi, H., Murakami, K., Todaka-Takai, R., Park, Y. and Katayama, K. (2012). Amplification of all 11 RNA segments of group A rotaviruses based on reverse transcription polymerase chain reaction. Microbiology and Immunology, [online] 56(9), pp.630–638. Available at: https://www.ncbi.nlm.nih.gov/pubmed/22708835 [Accessed 25 Mar. 2020].

Han, K., Tjaden, B. and Lory, S. (2016). GRIL-seq provides a method for identifying direct targets of bacterial small regulatory RNA by in vivo proximity ligation. Nature Microbiology, [online] 2, p.16239. Available at: https://www.ncbi.nlm.nih.gov/pubmed/28005055 [Accessed 25 Mar. 2020].

Hoydal, K.S., Jenssen, B.M., Letcher, R.J., Dam, M. and Arukwe, A. (2018). Hepatic phase I and II biotransformation responses and contaminant exposure in long-finned pilot whales from the Northeastern Atlantic. Marine Environmental Research, [online] 134, pp.44–54. Available at: https://www.ncbi.nlm.nih.gov/pubmed/29290385 [Accessed 25 Mar. 2020].

Hrabeta-Robinson, E., Marcus, E., Cozen, A.E., Phizicky, E.M. and Lowe, T.M. (2017). High-Throughput Small RNA Sequencing Enhanced by AlkB-Facilitated RNA de-Methylation (ARM-Seq). Methods in Molecular Biology (Clifton, N.J.), [online] 1562, pp.231–243. Available at: https://www.ncbi.nlm.nih.gov/pubmed/28349464 [Accessed 25 Mar. 2020].

Klauser, B. and Hartig, J.S. (2013). An engineered small RNA-mediated genetic switch based on a ribozyme expression platform. Nucleic Acids Research, [online] 41(10), pp.5542–5552. Available at: https://www.ncbi.nlm.nih.gov/pubmed/23585277 [Accessed 25 Mar. 2020].

Lim, Y.W., Sanz, L.A., Xu, X., Hartono, S.R. and Chédin, F. (2015). Genome-wide DNA hypomethylation and RNA:DNA hybrid accumulation in Aicardi-Goutières syndrome. eLife, [online] 4. Available at: https://www.ncbi.nlm.nih.gov/pubmed/26182405 [Accessed 25 Mar. 2020].

Lippai, D., Bala, S., Csak, T., Kurt-Jones, E.A. and Szabo, G. (2013). Chronic alcohol-induced microRNA-155 contributes to neuroinflammation in a TLR4-dependent manner in mice. PloS One, [online] 8(8), p.e70945. Available at: https://www.ncbi.nlm.nih.gov/pubmed/23951048 [Accessed 25 Mar. 2020].

Lu, T.X. and Rothenberg, M.E. (2018). MicroRNA. Journal of Allergy and Clinical Immunology, [online] 141(4), pp.1202–1207. Available at: https://www.jacionline.org/article/S0091-6749(17)31593-2/abstract [Accessed 25 Mar. 2020].

Mäki, A., Salmi, P., Mikkonen, A., Kremp, A. and Tiirola, M. (2017). Sample Preservation, DNA or RNA Extraction and Data Analysis for High-Throughput Phytoplankton Community Sequencing. Frontiers in Microbiology, 8.

Meerson, A. and Ploug, T. (2016). Assessment of six commercial plasma small RNA isolation kits using qRT-PCR and electrophoretic separation: higher recovery of microRNA following ultracentrifugation. Biology Methods and Protocols, [online] 1(1). Available at: https://academic.oup.com/biomethods/article/1/1/bpw003/2629267 [Accessed 25 Mar. 2020].

Paska, C., Barta, I., Drozdovszky, O. and Antus, B. (2017). Improving Gene-Expression Studies from Sputum: A Multistep Optimization of RNA Isolation and qPCR Protocols. American Journal of Respiratory Cell and Molecular Biology, [online] 57(5), pp.626–628. Available at: https://www.ncbi.nlm.nih.gov/pubmed/29090961 [Accessed 25 Mar. 2020].

Qin, Y., Yao, J., Wu, D.C., Nottingham, R.M., Mohr, S., Hunicke-Smith, S. and Lambowitz, A.M. (2016). High-throughput sequencing of human plasma RNA by using thermostable group II intron reverse transcriptases. RNA (New York, N.Y.), [online] 22(1), pp.111–128. Available at: https://www.ncbi.nlm.nih.gov/pubmed/26554030 [Accessed 25 Mar. 2020].

Selle, K., Goh, Y.J., Johnson, B.R., O’Flaherty, S., Andersen, J.M., Barrangou, R. and Klaenhammer, T.R. (2017). Deletion of Lipoteichoic Acid Synthase Impacts Expression of Genes Encoding Cell Surface Proteins in Lactobacillus acidophilus. Frontiers in Microbiology, [online] 8, p.553. Available at: https://www.ncbi.nlm.nih.gov/pubmed/28443071 [Accessed 25 Mar. 2020].

Sosanya, N.M., Huang, P.P.C., Cacheaux, L.P., Chen, C.J., Nguyen, K., Perrone-Bizzozero, N.I. and Raab-Graham, K.F. (2013). Degradation of high affinity HuD targets releases Kv1.1 mRNA from miR-129 repression by mTORC1. The Journal of Cell Biology, [online] 202(1), pp.53–69. Available at: https://www.ncbi.nlm.nih.gov/pubmed/23836929 [Accessed 25 Mar. 2020].

Talhouarne, G.J.S. and Gall, J.G. (2018). 7SL RNA in vertebrate red blood cells. RNA, [online] 24(7), pp.908–914. Available at: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6004055/ [Accessed 25 Mar. 2020].

Yeo, M., Berglund, K., Hanna, M., Guo, J.U., Kittur, J., Torres, M.D., Abramowitz, J., Busciglio, J., Gao, Y., Birnbaumer, L. and Liedtke, W.B. (2013). Bisphenol A delays the perinatal chloride shift in cortical neurons by epigenetic effects on the Kcc2 promoter. Proceedings of the National Academy of Sciences of the United States of America, [online] 110(11), pp.4315–4320. Available at: https://www.ncbi.nlm.nih.gov/pubmed/23440186 [Accessed 25 Mar. 2020].