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ChIP-IT Express citations

ChIP-IT® Express

Bogeas, A., Morvan-Dubois, G., El-Habr, E.A., Lejeune, F.-X., Defrance, M., Narayanan, A., Kuranda, K., Burel-Vandenbos, F., Sayd, S., Delaunay, V., Dubois, L.G., Parrinello, H., Rialle, S., Fabrega, S., Idbaih, A., Haiech, J., Bièche, I., Virolle, T., Goodhardt, M., Chneiweiss, H. and Junier, M.-P. (2017). Changes in chromatin state reveal ARNT2 at a node of a tumorigenic transcription factor signature driving glioblastoma cell aggressiveness. Acta Neuropathologica, 135(2), pp.267–283.

Ciechomska, I.A., Przanowski, P., Jackl, J., Wojtas, B. and Kaminska, B. (2016). BIX01294, an inhibitor of histone methyltransferase, induces autophagy-dependent differentiation of glioma stem-like cells. Scientific Reports, 6(1).

DeSmet, M., Kanginakudru, S., Rietz, A., Wu, W.-H., Roden, R. and Androphy, E.J. (2016). The Replicative Consequences of Papillomavirus E2 Protein Binding to the Origin Replication Factor ORC2. PLOS Pathogens, 12(10), p.e1005934.

Elbaz, B., Aaker, J.D., Isaac, S., Kolarzyk, A., Brugarolas, P., Eden, A. and Popko, B. (2018). Phosphorylation State of ZFP24 Controls Oligodendrocyte Differentiation. Cell Reports, [online] 23(8), pp.2254–2263. Available at: https://www.cell.com/cell-reports/fulltext/S2211-1247(18)30667-3?_returnURL=https%3A%2F%2Flinkinghub.elsevier.com%2Fretrieve%2Fpii%2FS2211124718306673%3Fshowall%3Dtrue [Accessed 17 Sep. 2020].

Guan, S., Lu, J., Zhao, Y., Yu, Y., Li, H., Chen, Z., Shi, Z., Liang, H., Wang, M., Guo, K., Chen, X., Sun, W., Bieerkehazhi, S., Xu, X., Sun, S., Agarwal, S. and Yang, J. (2017). MELK is a novel therapeutic target in high-risk neuroblastoma. Oncotarget, [online] 9(2), pp.2591–2602. Available at: https://www.oncotarget.com/article/23515/text/ [Accessed 17 Sep. 2020].

Hill, J.T., Anderson, K.R., Mastracci, T.L., Kaestner, K.H. and Sussel, L. (2011). Novel computational analysis of protein binding array data identifies direct targets of Nkx2.2 in the pancreas. BMC Bioinformatics, 12(1), p.62.

Hollingworth, R., Horniblow, R.D., Forrest, C., Stewart, G.S. and Grand, R.J. (2017). Localization of Double-Strand Break Repair Proteins to Viral Replication Compartments following Lytic Reactivation of Kaposi’s Sarcoma-Associated Herpesvirus. Journal of Virology, [online] 91(22). Available at: https://jvi.asm.org/content/91/22/e00930-17 [Accessed 17 Sep. 2020].

Jia, J., Parikh, H., Xiao, W., Hoskins, J.W., Pflicke, H., Liu, X., Collins, I., Zhou, W., Wang, Z., Powell, J., Thorgeirsson, S.S., Rudloff, U., Petersen, G.M. and Amundadottir, L.T. (2013). An integrated transcriptome and epigenome analysis identifies a novel candidate gene for pancreatic cancer. BMC Medical Genomics, 6(1).

Kerur, N., Fukuda, S., Banerjee, D., Kim, Y., Fu, D., Apicella, I., Varshney, A., Yasuma, R., Fowler, B.J., Baghdasaryan, E., Marion, K.M., Huang, X., Yasuma, T., Hirano, Y., Serbulea, V., Ambati, M., Ambati, V.L., Kajiwara, Y., Ambati, K., Hirahara, S., Bastos-Carvalho, A., Ogura, Y., Terasaki, H., Oshika, T., Kim, K.B., Hinton, D.R., Leitinger, N., Cambier, J.C., Buxbaum, J.D., Kenney, M.C., Jazwinski, S.M., Nagai, H., Hara, I., West, A.P., Fitzgerald, K.A., Sadda, S.R., Gelfand, B.D. and Ambati, J. (2017). cGAS drives noncanonical-inflammasome activation in age-related macular degeneration. Nature Medicine, [online] 24(1), pp.50–61. Available at: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5760363/ [Accessed 16 Dec. 2019].

Kijewska, M., Kocyk, M., Kloss, M., Stepniak, K., Korwek, Z., Polakowska, R., Dabrowski, M., Gieryng, A., Wojtas, B., Ciechomska, I.A. and Kaminska, B. (2016). The embryonic type of SPP1 transcriptional regulation is re-activated in glioblastoma. Oncotarget, [online] 8(10), pp.16340–16355. Available at: https://www.oncotarget.com/article/14092/text/ [Accessed 17 Sep. 2020].

Kubo, E., Chhunchha, B., Singh, P., Sasaki, H. and Singh, D.P. (2017). Sulforaphane reactivates cellular antioxidant defense by inducing Nrf2/ARE/Prdx6 activity during aging and oxidative stress. Scientific Reports, 7(1).

Marković, J., Grdović, N., Dinić, S., Karan-Djurašević, T., Uskoković, A., Arambašić, J., Mihailović, M., Pavlović, S., Poznanović, G. and Vidaković, M. (2013). PARP-1 and YY1 Are Important Novel Regulators of CXCL12 Gene Transcription in Rat Pancreatic Beta Cells. PLoS ONE, 8(3), p.e59679.

Miroshnikova, Y.A., Mouw, J.K., Barnes, J.M., Pickup, M.W., Lakins, J.N., Kim, Y., Lobo, K., Persson, A.I., Reis, G.F., McKnight, T.R., Holland, E.C., Phillips, J.J. and Weaver, V.M. (2016). Tissue mechanics promote IDH1-dependent HIF1α–tenascin C feedback to regulate glioblastoma aggression. Nature Cell Biology, [online] 18(12), pp.1336–1345. Available at: https://www.nature.com/articles/ncb3429 [Accessed 17 Sep. 2020].

Naik, R.R., Sotnikov, S.V., Diepold, R.P., Iurato, S., Markt, P.O., Bultmann, A., Brehm, N., Mattheus, T., Lutz, B., Erhardt, A., Binder, E.B., Schmidt, U., Holsboer, F., Landgraf, R. and Czibere, L. (2018). Polymorphism in Tmem132d regulates expression and anxiety-related behavior through binding of RNA polymerase II complex. Translational Psychiatry, [online] 8(1), pp.1–18. Available at: https://www.nature.com/articles/s41398-017-0025-2 [Accessed 17 Sep. 2020].

Rangasamy, D. (2013). Distinctive patterns of epigenetic marks are associated with promoter regions of mouse LINE-1 and LTR retrotransposons. Mobile DNA, 4(1), p.27.

Whittle, N., Maurer, V., Murphy, C., Rainer, J., Bindreither, D., Hauschild, M., Scharinger, A., Oberhauser, M., Keil, T., Brehm, C., Valovka, T., Striessnig, J. and Singewald, N. (2016). Enhancing dopaminergic signaling and histone acetylation promotes long-term rescue of deficient fear extinction. Translational Psychiatry, [online] 6(12), pp.e974–e974. Available at: https://www.nature.com/articles/tp2016231.

Yamauchi, A., Itaya-Hironaka, A., Sakuramoto-Tsuchida, S., Takeda, M., Yoshimoto, K., Miyaoka, T., Fujimura, T., Tsujinaka, H., Tsuchida, C., Ota, H. and Takasawa, S. (2015). Synergistic Activations of REG Iα and REG Iβ Promoters by IL-6 and Glucocorticoids through JAK/STAT Pathway in Human Pancreatic β Cells. [online] Journal of Diabetes Research. Available at: https://www.hindawi.com/journals/jdr/2015/173058/ [Accessed 17 Sep. 2020].

Zhang, Z., Nikolai, B.C., Gates, L.A., Jung, S.Y., Siwak, E.B., He, B., Rice, A.P., O’Malley, B.W. and Feng, Q. (2017). Crosstalk between histone modifications indicates that inhibition of arginine methyltransferase CARM1 activity reverses HIV latency. Nucleic Acids Research, [online] 45(16), pp.9348–9360. Available at: https://academic.oup.com/nar/article/45/16/9348/3871308 [Accessed 17 Sep. 2020].

ChIP-IT® Express Enzymatic

Azim, S., Zubair, H., Srivastava, S.K., Bhardwaj, A., Zubair, A., Ahmad, A., Singh, S., Khushman, M. and Singh, A.P. (2016). Deep sequencing and in silico analyses identify MYB-regulated gene networks and signaling pathways in pancreatic cancer. Scientific Reports, [online] 6(1), p.28446. Available at: https://www.nature.com/articles/srep28446 [Accessed 17 Sep. 2020].

Graham, C.D., Kaza, N., Pruitt, H.C., Gibson, L.M., Klocke, B.J., Shevde, L.A., Carroll, S.L. and Roth, K.A. (2016). BH3 mimetics suppress CXCL12 expression in human malignant peripheral nerve sheath tumor cells. Oncotarget, [online] 8(5), pp.8670–8678. Available at: https://www.oncotarget.com/article/14398/text/ [Accessed 17 Sep. 2020].

Lafferty, M.K., Sun, L., Christensen-Quick, A., Lu, W. and Garzino-Demo, A. (2017). Human Beta Defensin 2 Selectively Inhibits HIV-1 in Highly Permissive CCR6+CD4+ T Cells. Viruses, [online] 9(5), p.111. Available at: https://www.mdpi.com/1999-4915/9/5/111 [Accessed 17 Sep. 2020].

Ma, X., Jiao, X., Ma, Z. and Hejtmancik, J.F. (2016). Polymorphism rs7278468 is associated with Age-related cataract through decreasing transcriptional activity of the CRYAA promoter. Scientific Reports, [online] 6(1), p.23206. Available at: https://www.nature.com/articles/srep23206 [Accessed 17 Sep. 2020].

Murai, K., Shirasaki, T., Honda, M., Shimizu, R., Shimakami, T., Nakasho, S., Shirasaki, N., Okada, H., Sakai, Y., Yamashita, T. and Kaneko, S. (2018). Peretinoin, an Acyclic Retinoid, Inhibits Hepatitis B Virus Replication by Suppressing Sphingosine Metabolic Pathway In Vitro. International Journal of Molecular Sciences, [online] 19(2), p.108. Available at: https://www.mdpi.com/1422-0067/19/2/108 [Accessed 17 Sep. 2020].

Niess, H., Camaj, P., Mair, R., Renner, A., Zhao, Y., Jäckel, C., Nelson, P.J., Jauch, K.-W. and Bruns, C.J. (2014). Overexpression of IFN-induced protein with tetratricopeptide repeats 3 (IFIT3) in pancreatic cancer: cellular “pseudoinflammation” contributing to an aggressive phenotype. Oncotarget, [online] 6(5), pp.3306–3318. Available at: https://www.oncotarget.com/article/2494/text/ [Accessed 17 Sep. 2020].

Obora, K., Onodera, Y., Takehara, T., Frampton, J., Hasei, J., Ozaki, T., Teramura, T. and Fukuda, K. (2017). Inflammation-induced miRNA-155 inhibits self-renewal of neural stem cells via suppression of CCAAT/enhancer binding protein β (C/EBPβ) expression. Scientific Reports, [online] 7(1), p.43604. Available at: https://www.nature.com/articles/srep43604 [Accessed 17 Sep. 2020].

Paris, C., Pentland, I., Groves, I., Roberts, D.C., Powis, S.J., Coleman, N., Roberts, S. and Parish, J.L. (2015). CCCTC-Binding Factor Recruitment to the Early Region of the Human Papillomavirus 18 Genome Regulates Viral Oncogene Expression. Journal of Virology, [online] 89(9), pp.4770–4785. Available at: https://jvi.asm.org/content/89/9/4770 [Accessed 17 Sep. 2020].

Vemula, S., Veerasamy, R., Ragupathy, V., Biswas, S., Devadas, K. and Hewlett, I. (2015). HIV-1 Induced Nuclear Factor I-B (NF-IB) Expression Negatively Regulates HIV-1 Replication through Interaction with the Long Terminal Repeat Region. Viruses, 7(2), pp.543–558.

Wang, L., Howell, M.E.A., McPeak, B., Riggs, K., Kohne, C., Yohanon, J.U., Foxler, D.E., Sharp, T.V., Moorman, J.P., Yao, Z.Q. and Ning, S. (2017). LIMD1 is induced by and required for LMP1 signaling, and protects EBV-transformed cells from DNA damage-induced cell death. Oncotarget, [online] 9(5), pp.6282–6297. Available at: https://www.oncotarget.com/article/23676/text/ [Accessed 17 Sep. 2020].

Zahn, J., Kaplan, M.H., Fischer, S., Dai, M., Meng, F., Saha, A.K., Cervantes, P., Chan, S.M., Dube, D., Omenn, G.S., Markovitz, D.M. and Contreras-Galindo, R. (2015). Expansion of a novel endogenous retrovirus throughout the pericentromeres of modern humans. Genome Biology, 16(1).

ChIP-IT® Protein G Magnetic Beads

Ferrai, C., Torlai Triglia, E., Risner‐Janiczek, J.R., Rito, T., Rackham, O.J., Santiago, I., Kukalev, A., Nicodemi, M., Akalin, A., Li, M., Ungless, M.A. and Pombo, A. (2017). RNA polymerase II primes Polycomb‐repressed developmental genes throughout terminal neuronal differentiation. Molecular Systems Biology, [online] 13(10), p.946. Available at: https://www.embopress.org/doi/full/10.15252/msb.20177754 [Accessed 17 Sep. 2020].