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Accel-NGS 1S DNA library kit citations

Bekliz, M., Brandani, J., Bourquin, M., Battin, T. and Peter, H. (2019). Benchmarking protocols for the metagenomic analysis of stream biofilm viromes. PeerJ Preprints. [online] Available at: https://peerj.com/preprints/27914/. [Accessed 13 Nov. 2019].

Demey, L.M., Miller, C.R., Manzella, M.P., Spurbeck, R.R., Sandhu, S.K., Reguera, G. and Kashefi, K. (2017). The draft genome of the hyperthermophilic archaeon Pyrodictium delaneyi strain hulk, an iron and nitrate reducer, reveals the capacity for sulfate reduction. Standards in Genomic Sciences, [online] 12(1). Available at: https://environmentalmicrobiome.biomedcentral.com/track/pdf/10.1186/s40793-017-0260-4 [Accessed 13 Nov. 2019].

Fleming, A.M., Ding, Y. and Burrows, C.J. (2017). Sequencing DNA for the Oxidatively Modified Base 8-Oxo-7,8-Dihydroguanine. Methods in Enzymology, 591, pp.187–210. Available at: https://www.sciencedirect.com/science/article/pii/S007668791730085X [Accessed 13 Nov. 2019].

Garrett-Bakelman, F.E., Darshi, M., Green, S.J., Gur, R.C., Lin, L., Macias, B.R., McKenna, M.J., Meydan, C., Mishra, T., Nasrini, J., Piening, B.D., Rizzardi, L.F., Sharma, K., Siamwala, J.H., Taylor, L., Hotz Vitaterna, M., Afkarian, M., Afshinnekoo, E., Ahadi, S., Ambati, A., Arya, M., Bezdan, D., Callahan, C.M., Chen, S., Choi, A.M.K., Chlipala, G.E., Contrepois, K., Covington, M., Crucian, B.E., De Vivo, I., Dinges, D.F., Ebert, D.J., Feinberg, J.I., Gandara, J.A., George, K.A., Goutsias, J., Grills, G.S., Hargens, A.R., Heer, M., Hillary, R.P., Hoofnagle, A.N., Hook, V.Y.H., Jenkinson, G., Jiang, P., Keshavarzian, A., Laurie, S.S., Lee-McMullen, B., Lumpkins, S.B., MacKay, M., Maienschein-Cline, M.G., Melnick, A.M., Moore, T.M., Nakahira, K., Patel, H.H., Pietrzyk, R., Rao, V., Saito, R., Salins, D.N., Schilling, J.M., Sears, D.D., Sheridan, C.K., Stenger, M.B., Tryggvadottir, R., Urban, A.E., Vaisar, T., Van Espen, B., Zhang, J., Ziegler, M.G., Zwart, S.R., Charles, J.B., Kundrot, C.E., Scott, G.B.I., Bailey, S.M., Basner, M., Feinberg, A.P., Lee, S.M.C., Mason, C.E., Mignot, E., Rana, B.K., Smith, S.M., Snyder, M.P. and Turek, F.W. (2019). The NASA Twins Study: A multidimensional analysis of a year-long human spaceflight. Science, [online] 364(6436), p.eaau8650. Available at: https://science.sciencemag.org/content/364/6436/eaau8650 [Accessed 13 Oct. 2019].

Griese, M., Zarbock, R., Costabel, U., Hildebrandt, J., Theegarten, D., Albert, M., Thiel, A., Schams, A., Lange, J., Krenke, K., Wesselak, T., Schön, C., Kappler, M., Blum, H., Krebs, S., Jung, A., Kröner, C., Klein, C., Campo, I., Luisetti, M. and Bonella, F. (2015). GATA2 deficiency in children and adults with severe pulmonary alveolar proteinosis and hematologic disorders. BMC pulmonary medicine, [online] 15, p.87. Available at: https://www.ncbi.nlm.nih.gov/pubmed/26264606 [Accessed 13 Nov. 2019].

Inoue, F., Eckalbar, W.L., Wang, Y., Murphy, K.K., Matharu, N., Vaisse, C. and Ahituv, N. (2019). Genomic and epigenomic mapping of leptin-responsive neuronal populations involved in body weight regulation. Nature Metabolism, [online] 1(4), pp.475–484. Available at: https://www.nature.com/articles/s42255-019-0051-x [Accessed 13 Nov. 2019].

Johnson, J.G., Carpentier, S., Spurbeck, R.R., Sandhu, S.K. and DiRita, V.J. (2014). Genome Sequences of Campylobacter jejuni 81-176 Variants with Enhanced Fitness Relative to the Parental Strain in the Chicken Gastrointestinal Tract. Genome Announcements, [online] 2(1). Available at: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3916475/ [Accessed 13 Nov. 2019].

Lallemand, F., Logacheva, M., Le Clainche, I., Bérard, A., Zheleznaia, E., May, M., Jakalski, M., Delannoy, É., Le Paslier, M.-C. and Selosse, M.-A. (2019). Thirteen New Plastid Genomes from Mixotrophic and Autotrophic Species Provide Insights into Heterotrophy Evolution in Neottieae Orchids. Genome Biology and Evolution, [online] 11(9), pp.2457–2467. Available at: https://academic.oup.com/gbe/advance-article/doi/10.1093/gbe/evz170/5545086 [Accessed 13 Nov. 2019].

Lühken, G., Krebs, S., Rothammer, S., Küpper, J., Mioč, B., Russ, I. and Medugorac, I. (2016). The 1.78-kb insertion in the 3′-untranslated region of RXFP2 does not segregate with horn status in sheep breeds with variable horn status. Genetics Selection Evolution, [online] 48(1). Available at: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5072343/ [Accessed 13 Nov. 2019].

Poliseno, A., Breedy, O., Eitel, M., Wöerheide, G., Guzman, H.M., Krebs, S., Blum, H. and Vargas, S. (2016). Complete mitochondrial genome of Muricea crassa and Muricea purpurea (Anthozoa: Octocorallia) from the eastern tropical Pacific. BioRXIV. Available at: https://www.biorxiv.org/content/early/2016/03/24/042945 [Accessed 13 Nov. 2019]

Rosario, K., Fierer, N., Miller, S., Luongo, J. and Breitbart, M. (2018). Diversity of DNA and RNA Viruses in Indoor Air As Assessed via Metagenomic Sequencing. Environmental science & technology, [online] 52(3), pp.1014–1027. Available at: https://www.ncbi.nlm.nih.gov/pubmed/29298386 [Accessed 13 Nov. 2019].

Rothammer, S., Kunz, E., Seichter, D., Krebs, S., Wassertheurer, M., Fries, R., Brem, G. and Medugorac, I. (2017). Detection of two non-synonymous SNPs in SLC45A2 on BTA20 as candidate causal mutations for oculocutaneous albinism in Braunvieh cattle. Genetics Selection Evolution, [online] 49(1). Available at: https://gsejournal.biomedcentral.com/articles/10.1186/s12711-017-0349-7 [Accessed 13 Nov. 2019].

Roux, S., Solonenko, N.E., Dang, V.T., Poulos, B.T., Schwenck, S.M., Goldsmith, D.B., Coleman, M.L., Breitbart, M. and Sullivan, M.B. (2016). Towards quantitative viromics for both double-stranded and single-stranded DNA viruses. PeerJ, [online] 4, p.e2777. Available at: https://peerj.com/articles/2777/ [Accessed 13 Nov. 2019].

Roux, S., Trubl, G., Goudeau, D., Nath, N., Couradeau, E., Ahlgren, N.A., Zhan, Y., Marsan, D., Chen, F., Fuhrman, J.A., Northen, T.R., Sullivan, M.B., Rich, V.I., Malmstrom, R.R. and Eloe-Fadrosh, E.A. (2019). Optimizing de novo genome assembly from PCR-amplified metagenomes. PeerJ, [online] 7, p.e6902. Available at: https://peerj.com/articles/6902/ [Accessed 13 Nov. 2019].

Shimbo, T., Kawamura, M., Wijaya, E., Takaki, E., Kaneda, Y. and Tamai, K. (2019). Cut-C: cleavage under tethered nuclease for conformational capture. BMC Genomics, [online] 20(1). Available at: https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-019-5989-2 [Accessed 13 Nov. 2019].

Shirk, P.D., Perera, O.P., Shelby, K.S., Furlong, R.B., LoVullo, E.D. and Popham, H.J.R. (2015). Unique synteny and alternate splicing of the chitin synthases in closely related heliothine moths. Gene, [online] 574(1), pp.121–39. Available at: https://www.ncbi.nlm.nih.gov/pubmed/26253161 [Accessed 13 Nov. 2019].

Sproul, J.S. and Maddison, D.R. (2017). Sequencing historical specimens: successful preparation of small specimens with low amounts of degraded DNA. Molecular Ecology Resources, 17(6), pp.1183–1201. Available at: https://onlinelibrary.wiley.com/doi/full/10.1111/1755-0998.12660 [Accessed 13 Nov. 2019].

Sutormin, D., Rubanova, N., Logacheva, M., Ghilarov, D. and Severinov, K. (2018). Single-nucleotide-resolution mapping of DNA gyrase cleavage sites across the Escherichia coli genome. Nucleic Acids Research, [online] 47(3), pp.1373–1388. Available at: https://academic.oup.com/nar/article/47/3/1373/5229209 [Accessed 13 Nov. 2019].

Székely, A.J. and Breitbart, M. (2016). Single-stranded DNA phages: from early molecular biology tools to recent revolutions in environmental microbiology. FEMS microbiology letters, [online] 363(6), p.fnw027. Available at: https://www.ncbi.nlm.nih.gov/pubmed/26850442 [Accessed 13 Nov. 2019].

Trubl, G., Roux, S., Solonenko, N., Li, Y.-F., Bolduc, B., Rodríguez-Ramos, J., Eloe-Fadrosh, E.A., Rich, V.I. and Sullivan, M.B. (2019). Towards optimized viral metagenomes for double-stranded and single-stranded DNA viruses from challenging soils. PeerJ, [online] 7, p.e7265. Available at: https://peerj.com/articles/7265/ [Accessed 13 Nov. 2019].

Vong, J.S.L., Tsang, J.C.H., Jiang, P., Lee, W.-S., Leung, T.Y., Chan, K.C.A., Chiu, R.W.K. and Lo, Y.M.D. (2017). Single-Stranded DNA Library Preparation Preferentially Enriches Short Maternal DNA in Maternal Plasma. Clinical chemistry, [online] 63(5), pp.1031–1037. Available at: https://www.ncbi.nlm.nih.gov/pubmed/28280050 [Accessed 13 Nov. 2019].

Ye, F., Gao, H., Xiao, L., Zuo, Z., Liu, Y., Zhao, Q., Chen, H., Feng, W., Fu, B., Sun, L., Jiang, X., He, D., Jiang, H., Yang, M., Li, L., Chen, F., Liu, X., Li, S., Li, Z., Jiang, Y., Cheng, L. and Bu, H. (2018). Whole exome and target sequencing identifies MAP2K5 as novel susceptibility gene for familial non-medullary thyroid carcinoma. International Journal of Cancer, [online] 144(6), pp.1321–1330. Available at: https://onlinelibrary.wiley.com/doi/abs/10.1002/ijc.31825 [Accessed 13 Nov. 2019].

Zhao, S., Cheng, L., Gao, Y., Zhang, B., Zheng, X., Wang, L., Li, P., Sun, Q. and Li, H. (2018). Plant HP1 protein ADCP1 links multivalent H3K9 methylation readout to heterochromatin formation. Cell Research, [online] 29(1), pp.54–66. Available at: https://www.nature.com/articles/s41422-018-0104-9 [Accessed 13 Nov. 2019].