Pancrustacean phylogeny in the light of new phylogenomic data: support for remipedia as the possible sister group of hexapoda.
Mol Biol Evol. 2012 Mar;29(3):1031-45 doi: 10.1093/molbev/msr270
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Lai Z, Kane NC, Kozik A, Hodgins KA, Dlugosch KM, Barker MS, Matvienko M, Yu Q, Turner KG, Pearl SA, Bell GD, Zou Y, Grassa C, Guggisberg A, Adams KL, Anderson JV, Horvath DP, Kesseli RV, Burke JM, Michelmore RW, Rieseberg LH.
Genomics of Compositae weeds: EST libraries, microarrays, and evidence of introgression.
Am J Bot. 2012 Feb;99(2):209-18 doi: 10.3732/ajb.1100313
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Yi H, Cho YJ, Won S, Lee JE, Jin Yu H, Kim S, Schroth GP, Luo S, Chun J.
Duplex-specific nuclease efficiently removes rRNA for prokaryotic RNA-seq.
Nucleic Acids Res. 2011 Nov 1;39(20):e140 doi: 10.1093/nar/gkr617
pmid: 21880599
Surakasi VP, Mohamed AA, Kim Y.
RNA interference of β1 integrin subunit impairs development and immune responses of the beet armyworm, Spodoptera exigua.
J Insect Physiol. 2011 Nov;57(11):1537-44 doi: 10.1016/j.jinsphys.2011.08.006
pmid: 21856307
Bekal S, Domier LL, Niblack TL, Lambert KN.
Discovery and initial analysis of novel viral genomes in the soybean cyst nematode.
J Gen Virol. 2011 Aug;92(Pt 8):1870-9 doi: 10.1099/vir.0.030585-0
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Vogel H, Altincicek B, Glöckner G, Vilcinskas A.
A comprehensive transcriptome and immune-gene repertoire of the lepidopteran model host Galleria mellonella.
BMC Genomics. 2011 Jun 11;12:308 doi: 10.1186/1471-2164-12-308
pmid: 21663692
Grosse-Wilde E, Kuebler LS, Bucks S, Vogel H, Wicher D, Hansson BS.
Antennal transcriptome of Manduca sexta.
Proc Natl Acad Sci U S A. 2011 May 3;108(18):7449-54 doi: 10.1073/pnas.1017963108
pmid: 21498690
Fraser BA, Weadick CJ, Janowitz I, Rodd FH, Hughes KA.
Sequencing and characterization of the guppy (Poecilia reticulata) transcriptome.
BMC Genomics. 2011 Apr 20;12:202 doi: 10.1186/1471-2164-12-202
pmid: 21507250
Zhang Z, Wang Y, Wang S, Liu J, Warren W, Mitreva M, Walter RB.
Transcriptome analysis of female and male Xiphophorus maculatus Jp 163 A.
PLoS One. 2011 Apr 5;6(4):e18379 doi: 10.1371/journal.pone.0018379
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Bowman S, Hubert S, Higgins B, Stone C, Kimball J, Borza T, Bussey JT, Simpson G, Kozera C, Curtis BA, Hall JR, Hori TS, Feng CY, Rise M, Booman M, Gamperl AK, Trippel E, Symonds J, Johnson SC, Rise ML.
An integrated approach to gene discovery and marker development in Atlantic cod (Gadus morhua).
Mar Biotechnol (NY). 2011 Apr;13(2):242-55 doi: 10.1007/s10126-010-9285-z
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Lee S, Shrestha S, Prasad SV, Kim Y.
Role of a small G protein Ras in cellular immune response of the beet armyworm, Spodoptera exigua.
J Insect Physiol. 2011 Mar;57(3):356-62 doi: 10.1016/j.jinsphys.2010.12.003
pmid: 21167168
Karatolos N, Pauchet Y, Wilkinson P, Chauhan R, Denholm I, Gorman K, Nelson DR, Bass C, ffrench-Constant RH, Williamson MS.
Pyrosequencing the transcriptome of the greenhouse whitefly, Trialeurodes vaporariorum reveals multiple transcripts encoding insecticide targets and detoxifying enzymes.
BMC Genomics. 2011 Jan 24;12:56 doi: 10.1186/1471-2164-12-56
pmid: 21261962
Ke T, Dong C-H, Mao H, Zhao Y-Z, Liu H-Y, Liu S-Y.
Construction of a Normalized Full-Length cDNA Library of Sesame Developing Seed by DSN and SMART™.
Agricultural Sciences in China. 2011;10(7):1004-9
Srivastava A, Rogers WL, Breton CM, Cai L, Malmberg RL.
Transcriptome analysis of sarracenia, an insectivorous plant.
DNA Res. 2011;18(4):253-61 doi: 10.1093/dnares/dsr014
pmid: 21676972
Pauchet Y, Wilkinson P, Chauhan R, Ffrench-Constant RH.
Diversity of beetle genes encoding novel plant cell wall degrading enzymes.
PLoS One. 2010 Dec 17;5(12):e15635 doi: 10.1371/journal.pone.0015635
pmid: 21179425
Carvalho RA, Azeredo-Espin AM, Torres TT.
Deep sequencing of New World screw-worm transcripts to discover genes involved in insecticide resistance.
BMC Genomics. 2010 Dec 8;11:695 doi: 10.1186/1471-2164-11-695
pmid: 21143848
Gong P, Pirooznia M, Guan X, Perkins EJ.
Design, validation and annotation of transcriptome-wide oligonucleotide probes for the oligochaete annelid Eisenia fetida.
PLoS One. 2010 Dec 8;5(12):e14266 doi: 10.1371/journal.pone.0014266
pmid: 21170345
Prentis PJ, Woolfit M, Thomas-Hall SR, Ortiz-Barrientos D, Pavasovic A, Lowe AJ, Schenk PM.
Massively parallel sequencing and analysis of expressed sequence tags in a successful invasive plant.
Ann Bot. 2010 Dec;106(6):1009-17 doi: 10.1093/aob/mcq201
pmid: 20929896
Yang P, Li X, Shipp MJ, Shockey JM, Cahoon EB.
Mining the bitter melon (momordica charantia l.) seed transcriptome by 454 analysis of non-normalized and normalized cDNA populations for conjugated fatty acid metabolism-related genes.
BMC Plant Biol. 2010 Nov 16;10:250 doi: 10.1186/1471-2229-10-250
pmid: 21080948
Henry JJ, Perry KJ, Fukui L, Alvi N.
Differential localization of mRNAs during early development in the mollusc, Crepidula fornicata.
Integr Comp Biol. 2010 Nov;50(5):720-33 doi: 10.1093/icb/icq088
pmid: 21558235
Lambert JD, Chan XY, Spiecker B, Sweet HC.
Characterizing the embryonic transcriptome of the snail Ilyanassa.
Integr Comp Biol. 2010 Nov;50(5):768-77 doi: 10.1093/icb/icq121
pmid: 21558239
K Gedye, J Gonzalez-Hernandez, Y Ban, X Ge, J Thimmapuram, F Sun, Ch Wright, Sh Ali, A Boe, and V Owens.
Investigation of the Transcriptome of Prairie Cord Grass, a New Cellulosic Biomass Crop.
THE PLANT GENOME. 2010 Sep;3(2):69-80 https://www.crops.org
Rawat A, Gust KA, Deng Y, Garcia-Reyero N, Quinn MJ Jr, Johnson MS, Indest KJ, Elasri MO, Perkins EJ.
From raw materials to validated system: the construction of a genomic library and microarray to interpret systemic perturbations in Northern bobwhite.
Physiol Genomics. 2010 Jul 7;42(2):219-35 doi: 10.1152/physiolgenomics.00022.2010
pmid: 20406850
Klein C, Scoggin KE, Ealy AD, Troedsson MH.
Transcriptional profiling of equine endometrium during the time of maternal recognition of pregnancy.
Biol Reprod. 2010 Jul;83(1):102-13 doi: 10.1095/biolreprod.109.081612
pmid: 20335638
Liu F, Wang D, Fu J, Sun G, Shen Y, Dong L, Zhang B, Hu S, Li J.
Identification of immune-relevant genes by expressed sequence tag analysis of head kidney from grass carp (Ctenopharyngodon idella).
Comp Biochem Physiol Part D Genomics Proteomics. 2010 Jun;5(2):116-23 doi: 10.1016/j.cbd.2010.02.003
pmid: 20403773
Durrett TP, McClosky DD, Tumaney AW, Elzinga DA, Ohlrogge J, Pollard M.
A distinct DGAT with sn-3 acetyltransferase activity that synthesizes unusual, reduced-viscosity oils in Euonymus and transgenic seeds.
Proc Natl Acad Sci U S A. 2010 May 18;107(20):9464-9 doi: 10.1073/pnas.1001707107
pmid: 20439724
Bogdanova EA, Shagina I, Barsova EV, Kelmanson I, Shagin DA, Lukyanov SA.
Normalizing cDNA libraries.
Curr Protoc Mol Biol. 2010 Apr;Chapter 5:Unit 5.12.1-27 doi: 10.1002/0471142727.mb0512s90
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Buggs RJ, Chamala S, Wu W, Gao L, May GD, Schnable PS, Soltis DE, Soltis PS, Barbazuk WB.
Characterization of duplicate gene evolution in the recent natural allopolyploid Tragopogon miscellus by next-generation sequencing and Sequenom iPLEX MassARRAY genotyping.
Mol Ecol. 2010 Mar;19 Suppl 1:132-46 doi: 10.1111/j.1365-294X.2009.04469.x
pmid: 20331776
Sadd BM, Kube M, Klages S, Reinhardt R, Schmid-Hempel P.
Analysis of a normalised expressed sequence tag (EST) library from a key pollinator, the bumblebee Bombus terrestris.
BMC Genomics. 2010 Feb 15;11:110 doi: 10.1186/1471-2164-11-110
pmid: 20156341
Pauchet Y, Wilkinson P, Vogel H, Nelson DR, Reynolds SE, Heckel DG, ffrench-Constant RH.
Pyrosequencing the Manduca sexta larval midgut transcriptome: messages for digestion, detoxification and defence.
Insect Mol Biol. 2010 Feb;19(1):61-75 doi: 10.1111/j.1365-2583.2009.00936.x
pmid: 19909380
Vogel H, Heidel AJ, Heckel DG, Groot AT.
Transcriptome analysis of the sex pheromone gland of the noctuid moth Heliothis virescens.
BMC Genomics. 2010 Jan 14;11:29 doi: 10.1186/1471-2164-11-29
pmid: 20074338